PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G18630.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 591aa    MW: 64768.3 Da    PI: 4.9967
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G18630.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.41.6e-104965443283
                      --SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
               B3  32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                      +s  ++l+d+  r W v +    k+  + +t+GWk Fv an+L++gD++ + 
  LPERR02G18630.2 496 RS-VIILKDPMKRLWPVIY--YEKPIFVGFTAGWKPFVAANNLQVGDVCKLV 544
                      33.799*************..****************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508638.727463560IPR003340B3 DNA binding domain
SMARTSM010190.003465560IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.5E-11471544IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-12472544IPR015300DNA-binding pseudobarrel domain
CDDcd100172.02E-11474551No hitNo description
PfamPF023625.7E-8495544IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MKKRKERHTL SDDLVSSYSG QDSEGIYDDS HVSGESSRRK EPKITVDVEI VPSNVAAKSI  60
NTASETKDPE RVESGVGNES LMALGNKDKN LGDGECKTRS DSVLCIQEET RRSEVIIITD  120
EASSTQENED TMKQRTSNEA SETHHMPINT QKEAERVGDD VWHESSVALN NKMGNMILGK  180
CKNNDVSPIC STGRTNGSEI IPTTDSIPLA QEDNDREKLS TFSCLKEGKS TTREPELAAT  240
TPTKCTEIHD LDEDSRQKHQ RNSVQVKSTI DIDNYPNNGE MNSSGNDSRL YEAPGGSRCL  300
QKWKEDIVSG QAAHDEIGQV RPEKPQNAGE KFVDNCGPMG QTPVDPRLES DVTDTCLKSV  360
LTIPIEQLPS PDSVSVSKYG DGSADGNHFF NRKGATAQLQ ATKEPLKPTC SGGSRQGDKI  420
LVSASRAHQS ELQIPQQENA KFSCCVTPVA LVPANDELQD LDDHSLQLCI SSTIQKWIEL  480
PKSVPKAPLN KGLHDRSVII LKDPMKRLWP VIYYEKPIFV GFTAGWKPFV AANNLQVGDV  540
CKLVKELDED EPAYQASRKI VVFCCSNNNN VLGCCGWPPG CLAAVLGGLH F
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624190.10.0PREDICTED: B3 domain-containing protein Os02g0598200
RefseqXP_015624189.10.0PREDICTED: B3 domain-containing protein Os02g0598200
SwissprotQ6K5K20.0Y2982_ORYSJ; B3 domain-containing protein Os02g0598200
TrEMBLA0A0D9VHV40.0A0A0D9VHV4_9ORYZ; Uncharacterized protein
STRINGLOC_Os02g38470.10.0(Oryza sativa Japonica Group)